Berloff P, McWilliams J (2002) Material transport in oceanic gyres. Part II: Hierarchy of stochastic models. Journal of Physical Oceanography 32:797–830.

Berloff P, McWilliams J, Bracco A (2002) Material transport in oceanic gyres. Part I: Phenomenology. Journal of Physical Oceanography 32:764–796.

Blanke, B and Raynaud S, 1997. Kinematics of the Pacific Equatorial Undercurrent: a Eulerian and Lagrangian approach from GCM results. J. Phys. Oceanogr., 27, 1038- 1053.

Blanke, B., M. Arhan, G. Madec, and S. Roche, 1999: Warm water paths in the equat- orial Atlantic as diagnosed with a general circulation model. J. Phys. Oceanogr., 29, 2753-2768.

Blanke B.,S.Speich,G.Madec and K.Döös 2001: A Global Diagnostic of Interocean Mass Transfers. J. Phys. Oceanogr. vol. 31, No. 6, 1623-1642.

Bracco A, LaCasce J, Provenzale A (2000a) Velocity probability density functions for oceanic floats. Journal of Physical Oceanography 30:461–474.

Bracco A, LaCasce J, Pasquero C, Provenzale A (2000b) Velocity PDFs in barotropic turbulence. Physics of Fluids 12:2478–2488.

Bracco A, Chassignet EP, Garraffo Z, Provenzale A (2003) Lagrangian velocity distri- butions in a high resolution numerical simulation of the North Atlantic. Journal of Atmospheric and Oceanic Technology 8:1212–1220.

Butcher JC (2008) Numerical methods for ordinary differential equations (2nd ed.), John Wiley & Sons Ltd.

Corell H., K. Döös, 2013: Difference in Particle Transport between Two Coastal Areas in the Baltic Sea Investigated with High-Resolution Trajectory Modeling. Ambio. DOI 10.1007/s13280-013-0397-3.

Corell H., P.O. Moksnes, A. Engqvist, K. Döös, P. R. Jonsson, 2012: Larval depth distribution critically affects dispersal and the efficiency of marine protected areas, Marine Ecology Progress Series, doi: 10.3354/meps09963.

Döös, K. 1995. Inter-ocean exchange of water masses. J. Geophys. Res. 100 (C7), 13499- 13514.

Döös K. and A.C. Coward 1997: The Southern Ocean as the major upwelling zone of the North Atlantic Deep Water. WOCE Newsletter, No. 27, July 1997, 3-17.

Döös, K., M. Meier and R. Döscher, 2004: The Baltic Haline Conveyor Belt or The Overturning Circulation and Mixing in the Baltic. Ambio, Vol 23, No 4-5, 261-266.

Döös K., A.Engqvist, 2007: Assessment of water exchange between a discharge region and the open sea - A comparison of different methodological concepts. Estuarine, Coastal and Shelf Science. Estuarine, Coastal and Shelf Science 74 (2007) 585-597.

Döös, K., J. Nycander and A.C. Coward, 2008: Lagrangian decomposition of the Dea- con Cell. J. Geophys. Res., DOI: 10.1029/ 2007JC004351

Döös K, Rupolo V, Brodeau L (2011) Dispersion of surface drifters and model-simulated trajectories. Ocean Modelling 39(3-4):301–310 doi:10.1016/j.ocemod.2011.05.005

Drijfhout S., P. De Vries, K. Döös, A. Coward 2003: Impact of eddy-induced transport of the Lagrangian structure of the upper branch of the thermohaline circulation. J. Phys. Oceanogr. 33, 2141-2155.

Engqvist A., K. Döös and O. Andrejev, 2006: Modeling Water Exchange and Contam- inant Transport through a Baltic Coastal Region. Ambio Vol. 35, No. 8.

Fabbroni N (2009) Numerical simulations of passive tracers dispersion in the sea. Alma Mater Studiorum – Universita di Bologna, PhD Thesis, 164 pp,

Griffa A (1996) Applications of stochastic particle models to ocean- ographic problems. In: Adler RJ, Müller P, Rozovoskii BL (Eds), Stochastic Modelling in Physical Ocean- ography, Birkhäuser, pp 114–140.

Huber M., H. Brinkhuis, C. Stickley, K. Döös, A. Sluijs, J. Warnaar, S. Schellenberg, G. Williams, 2004: Eocene circulation of the Southern Ocean: was Antarctica kept warm by subtropical waters? Paleoceanography Vol. 19. PA4026.

Jönsson, B , Lundberg P. and Döös K, 2004. Baltic Sub-Basin Turnover Times Examined Using the Rossby Centre Ocean Model. Ambio, Vol 23, No 4-5, 2257-260.

Kimura S, Döös K, Coward AC (1999) Numerical simulation to resolve the issue of downstream migration of the Japanese eel. Marine Ecology Progress Series 186:303–306.

Kjellsson J, Döös K (2012) Lagrangian decomposition of the Hadley and Ferrel Cells. Geophysical Research Letters 39:L15807 doi:10.1029/2012GL052420

Koch-Larrouy A, Madec G, Blanke B, Molcard R (2008) Water mass transformation along the Indonesian throughflow in an OGCM. Ocean Dynamics 58(3-4):289–309, doi: 10.1007/s10236-008-0155-4.

Levine, R.C. 2005. Changes in shelf waters due to air-sea fluxes and their influence on the Arctic Ocean circulation as simulated in the OCCAM global ocean model. University of Southampton, Faculty of Engineering Science and Mathematics, School of Ocean and Earth Science, PhD Thesis, 225pp.

Marsh, R. and A. P. Megann, 2002: Tracing water masses with particle trajectories in an isopycnic-coordinate model of the global ocean. Ocean Modelling, 4, 27-53.

Mesinger, F. and Arakawa, A., 1976. Numerical methods used in atmospheric models. GARP publications series 17 I 64 pp.

Nilsson Jacobi M., André C., Döös K., Jonsson PR, 2012: Identification of subpopula- tions from connectivity matrices. Ecography 35: 001-013, 2012, doi: 10.1111/j.1600- 0587.2012.07281.x

Nycander J, Döös K, Coward AC (2002) Chaotic and regular trajectories in the Antarctic Circumpolar. Tellus A 54(1):99–106.

Pasquero C, Provenzale A, Babiano A (2001) Parameterization of dispersion in two- dimensional turbulence. Journal of Fluid Mechanics 439:279–303.

Rupolo V (2007) Observing turbulence regimes and Lagrangian dispersal properties in the ocean. In: Griffa A, Kirwan AD, Mariano AJ, Ozgokmen TM, Rossby T (Eds), Lagrangian analysis and prediction of coastal and ocean dynamics (LAPCOD). Cam- bridge University Press, pp 423–479.

Simmons, A.J. and D.M. Burridge, 1981. An Energy and Angular-Momentum Con- serving Vertical Finite-Difference Scheme and Hybrid Vertical Coordinates. Monthly Weather Review. 109, 4, 758-766.

Soomere T, Delpeche N, Viikmäe B, Quak E, Meier HEM, Döös K (2011) Patterns of current-induced transport in the surface layer of the Gulf of Finland. Boreal Environ- ment Reseasrch 16(Suppl A):49–63.

Speich S., B. Blanke, P. de Vries , K. Döös, S. Drijfhout , A. Ganachaud and R. Marsh 2002: Tasman leakage: a new route in the global ocean conveyor belt. Geophysical Res. Letters, VOL. 29, NO. 10.

Vries, P. de and K. Döös, 2001. Calculating Lagrangian trajectories using time- dependent velocity fields. J. Atmos. Oceanic Technology. Vol. 18, No. 6, 1092-1101.